PoTHoS Phyto Transcriptomics by High-throughput Sequencer

Register files: Submit fastq files (*.fastq.gz) for analysis.
Register samples: Group files into samples.
Register groups: Group samples.
系列登録: 登録したサンプルまたはグループを系列にします。
Quality of sample: Display the number of reads derived from the in-line control.

Settings: Settings for the mapping the reads to the assembled reference.
Summary of Mapping: Show the number of reads, rate for mapping by each sample.
Expression level: Show tag count for each contigs.
Display the mapped image (pile image): Draw pile image for the reads mapped to contig.

Cluster analysis: Make a cluster of samples based on the expression pattern of contigs.

Nucleotide sequences: Search transcript sequence.
Protein: Search amino acid sequence.
Genome: Show genome sequence.
Blast search: Search sequences registered in PoTHoS by BLAST.
キーワード検索: 配列IDまたはアノテーション中の文字列を検索します。
Download: Download nucleotide and amino acid sequences stored in PoTHoS as FASTA format.

Summary of mapping.

Sample name	Reads	Mapped reads	Ratio	reports	Ratio
HT_0	9,588,131	9,035,816	94.2 %	9,035,816	100.0 %
HT_140	10,948,077	10,349,421	94.5 %	10,349,421	100.0 %
HT_250	13,677,874	12,822,576	93.7 %	12,822,576	100.0 %
HT_500	7,884,258	7,379,524	93.6 %	7,379,524	100.0 %

Download tag count as CSV (2014/10/26 00:14 2014-10-26T00:14:40+09:00Sun, 26 Oct 2014 00:14:40 +0900Asia/Tokyoam31Asia/Tokyo26)

Download ppm of expression as CSV (2014/10/26 00:14 2014-10-26T00:14:41+09:00Sun, 26 Oct 2014 00:14:41 +0900Asia/Tokyoam31Asia/Tokyo26)