Phyto Transcriptomics by High-throughput Sequencer
Top page of project.
Configuration of project.
Control members who could access to data.
Submit fastq files (*.fastq.gz) for analysis.
Group files into samples.
Quality of sample
Display the number of reads derived from the in-line control.
Settings for the assembling of reads.
Summary of the assemble.
Detail of contig
Display the sequence of contig.
Search contigs by using BLAST.
Display SNPs observed in contigs.
Configure annotation options.
Summary of Annotation.
Settings for the mapping the reads to the assembled reference.
Summary of Mapping
Show the number of reads, rate for mapping by each sample.
Show tag count for each contigs.
Display the mapped image (pile image)
Draw pile image for the reads mapped to contig.
Two samples analysis
Draw scatter plot.
Multi samples analysis
Make a cluster of samples based on the expression pattern of contigs.
Two groups analysis
Differentical analysis between two groups using edgeR, an R package.
Search transcript sequence.
Search amino acid sequence.
Show genome sequence.
Search sequences registered in PoTHoS by BLAST.
Download nucleotide and amino acid sequences stored in PoTHoS as FASTA format.
Please login to show the data under access control.
Register e-mail address.
Cluster analysis among samples
Configure samples for cluster analysis
Please drag and drop samples for cluster analysis to used box.
Use all samples