Project

Top
Top page of project.
Settings
Configuration of project.
Register members
Control members who could access to data.

Sample

Register files
Submit fastq files (*.fastq.gz) for analysis.
Register samples
Group files into samples.
Register groups
Group samples.
系列登録
登録したサンプルまたはグループを系列にします。
Quality of sample
Display the number of reads derived from the in-line control.

Assemble

Settings
Settings for the assembling of reads.
Result
Summary of the assemble.
Detail of contig
Display the sequence of contig.
Search contigs
Search contigs by using BLAST.
Detect SNPs
Display SNPs observed in contigs.

Annotation

Settings
Configure annotation options.
Result
Summary of Annotation.

Mapping

Settings
Settings for the mapping the reads to the assembled reference.
Summary of Mapping
Show the number of reads, rate for mapping by each sample.
Expression level
Show tag count for each contigs.
Display the mapped image (pile image)
Draw pile image for the reads mapped to contig.

Two samples analysis

比較解析
サンプル間で発現量の比を計算し、遺伝子を絞り込みます。
Scatter plot
Draw scatter plot.

Multi samples analysis

Cluster analysis
Make a cluster of samples based on the expression pattern of contigs.

Two groups analysis

edgeR
Differentical analysis between two groups using edgeR, an R package.

Reference

Nucleotide sequences
Search transcript sequence.
Protein
Search amino acid sequence.
Genome
Show genome sequence.
Blast search
Search sequences registered in PoTHoS by BLAST.
キーワード検索
配列IDまたはアノテーション中の文字列を検索します。
Download
Download nucleotide and amino acid sequences stored in PoTHoS as FASTA format.

Authentication

Login
Please login to show the data under access control.
Registration
Register e-mail address.

Summary of mapping.


GroupSample nameReadsMapped readsRatioreportsRatio
x10m12h x10m12h_1 7,191,686 6,115,899 85.0 % 0 0.0 %
x10m12h_2 6,724,218 5,996,322 89.2 % 0 0.0 %
x10m6h x10m6h_1 7,762,282 7,142,267 92.0 % 0 0.0 %
x10m6h_2 12,988,857 11,988,841 92.3 % 0 0.0 %
x15m12h x15m12h_1 8,496,774 7,848,310 92.4 % 0 0.0 %
x15m12h_2 7,957,408 7,134,272 89.7 % 0 0.0 %
x15m12h_3 5,541,018 4,807,498 86.8 % 0 0.0 %
x15m12h_4 5,517,193 5,079,711 92.1 % 0 0.0 %
x15m6h x15m6h_1 5,058,891 4,702,640 93.0 % 0 0.0 %
x15m6h_2 11,288,307 10,287,160 91.1 % 0 0.0 %
x15m6h_3 5,538,450 5,149,953 93.0 % 0 0.0 %
x5m12h x5m12h_1 5,883,168 5,482,388 93.2 % 0 0.0 %
x5m12h_2 6,301,956 5,740,435 91.1 % 0 0.0 %
x5m12h_3 5,306,289 4,911,224 92.6 % 0 0.0 %
x5m6h x5m6h_1 8,075,058 7,504,896 92.9 % 0 0.0 %
x5m6h_2 9,581,453 8,855,021 92.4 % 0 0.0 %
PG xPG_1 11,291,155 10,601,254 93.9 % 0 0.0 %
xPG_2 7,093,049 6,658,486 93.9 % 0 0.0 %
xPG_3 6,898,284 6,468,936 93.8 % 0 0.0 %
xPG_4 6,008,308 5,608,114 93.3 % 0 0.0 %
wo12h xwo12h_1 5,641,268 5,084,301 90.1 % 0 0.0 %
xwo12h_2 5,361,465 4,971,663 92.7 % 0 0.0 %
xwo12h_3 1,125,659 1,026,341 91.2 % 0 0.0 %
wo6h xwo6h_1 6,115,284 5,699,790 93.2 % 0 0.0 %
xwo6h_2 1,112,684 1,021,749 91.8 % 0 0.0 %
xwo6h_3 5,805,485 4,730,728 81.5 % 0 0.0 %
xwo6h_4 407,577 361,441 88.7 % 0 0.0 %

Download tag count as CSV (2013/02/21 11:02 2013-02-21T11:02:37+09:00Thu, 21 Feb 2013 11:02:37 +0900Asia/Tokyoam28Asia/Tokyo21)

Download ppm of expression as CSV (2013/02/21 11:02 2013-02-21T11:02:38+09:00Thu, 21 Feb 2013 11:02:38 +0900Asia/Tokyoam28Asia/Tokyo21)