Project

Top
Top page of project.
Settings
Configuration of project.
Register members
Control members who could access to data.

Sample

Register files
Submit fastq files (*.fastq.gz) for analysis.
Register samples
Group files into samples.
Register groups
Group samples.
系列登録
登録したサンプルまたはグループを系列にします。
Quality of sample
Display the number of reads derived from the in-line control.

Assemble

Settings
Settings for the assembling of reads.
Result
Summary of the assemble.
Detail of contig
Display the sequence of contig.
Search contigs
Search contigs by using BLAST.
Detect SNPs
Display SNPs observed in contigs.

Annotation

Settings
Configure annotation options.
Result
Summary of Annotation.

Mapping

Settings
Settings for the mapping the reads to the assembled reference.
Summary of Mapping
Show the number of reads, rate for mapping by each sample.
Expression level
Show tag count for each contigs.
Display the mapped image (pile image)
Draw pile image for the reads mapped to contig.

Two samples analysis

比較解析
サンプル間で発現量の比を計算し、遺伝子を絞り込みます。
Scatter plot
Draw scatter plot.

Multi samples analysis

Cluster analysis
Make a cluster of samples based on the expression pattern of contigs.

Two groups analysis

edgeR
Differentical analysis between two groups using edgeR, an R package.

Reference

Nucleotide sequences
Search transcript sequence.
Protein
Search amino acid sequence.
Genome
Show genome sequence.
Blast search
Search sequences registered in PoTHoS by BLAST.
キーワード検索
配列IDまたはアノテーション中の文字列を検索します。
Download
Download nucleotide and amino acid sequences stored in PoTHoS as FASTA format.

Authentication

Login
Please login to show the data under access control.
Registration
Register e-mail address.

Send file


Submit a file

List of submitted files.

file nameRead lengthFile sizeDownload
10m12h_1.fastq.gz33208,620,828Download
10m12h_2.fastq.gz33189,425,439Download
10m6h_1.fastq.gz33262,239,863Download
10m6h_2.fastq.gz33401,025,683Download
15m12h_1.fastq.gz33248,437,343Download
15m12h_2.fastq.gz33232,764,428Download
15m12h_3.fastq.gz33152,975,492Download
15m12h_4.fastq.gz33156,191,208Download
15m6h_1.fastq.gz33168,684,317Download
15m6h_2.fastq.gz33312,503,703Download
15m6h_3.fastq.gz33155,559,559Download
5m12h_1.fastq.gz33172,098,894Download
5m12h_2.fastq.gz33199,927,294Download
5m12h_3.fastq.gz33177,267,323Download
5m6h_1.fastq.gz33273,351,641Download
5m6h_2.fastq.gz33323,297,146Download
Okuda1.fastq.gz66584,736,789Download
Okuda2.fastq.gz66441,208,306Download
Okuda3.fastq.gz66305,637,014Download
PG_1.fastq.gz33325,266,059Download
PG_2.fastq.gz33238,656,150Download
PG_3.fastq.gz33232,574,565Download
PG_4.fastq.gz33162,954,894Download
wo12h_1.fastq.gz33158,436,005Download
wo12h_2.fastq.gz33152,564,398Download
wo12h_3.fastq.gz3331,799,138Download
wo6h_1.fastq.gz33170,990,697Download
wo6h_2.fastq.gz3331,392,604Download
wo6h_3.fastq.gz33158,471,048Download
wo6h_4.fastq.gz3311,313,996Download

Download all files. (6 GB)